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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20558439_20558635_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20558439 - 20558635
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TGCTGTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACTC
Flanking Amino Acid:
AEEKDSMSRYDSDGDKSDDL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.7
36.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
74.3
0.55
1
64.8
45.7
Minor 5ss
30
-2.3
3.2
39
39.8
Minor BPS
42.5
-0.5
2
48.45
41.6

Associated Gene:

Gene:
TLE3
Ensembl Gene ID:
ENSAPLG00000029482
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043673
20553369 - 20566922
13554
ENSAPLT00000031938
20553369 - 20567252
13884