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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20558756_20560719_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20558756 - 20560719
Intron Length:
1964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
LDHRERDSSANNSVSPSESL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
TLE3
Ensembl Gene ID:
ENSAPLG00000029482
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043673
20553369 - 20566922
13554
ENSAPLT00000031938
20553369 - 20567252
13884