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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20601857_20605584_R

Intron Information:

Intron Rank:
138693
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
20601857 - 20605584
Intron Length:
3728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
TTATTCGATGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
53.2
0.07
1.8
62.6
43.2
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022128
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045327
20600461 - 20605658
5198