About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20612003_20612193_F

Intron Information:

Intron Rank:
146131
Intron Class:
major
Intron Phase:
Intron Coordinates:
20612003 - 20612193
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
ATTTTCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
64.5
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.3
0.77
0.9
81.6
35.5
Minor 5ss
24.2
-3
3.2
26.5
38
Minor BPS
65.2
0.56
1.7
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028718
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020986
20611489 - 20612688
1200