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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20717930_20718691_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20717930 - 20718691
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TACTTTTTAACT
Flanking Amino Acid:
YRTHLLSAVQGHMDEDVQAA
Intron Amino Acid Position:
1375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.3
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.6
0.53
0.9
66.1
40.8
Minor 5ss
43.4
-0.7
2.8
55.2
49
Minor BPS
77
0.93
1.1
84.25
36.7

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044372
20717596 - 20736523
18928
ENSAPLT00000024087
20717596 - 20746317
28722
ENSAPLT00000004212
20717596 - 20736523
18928