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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20718758_20719707_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20718758 - 20719707
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTCCTTTTATA
Flanking Amino Acid:
QVKTLQQQLADAKRQHQEVV
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.2
0.77
0.7
79.7
25.9
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
58.3
0.25
1.6
68.17
38.4

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044372
20717596 - 20736523
18928
ENSAPLT00000024087
20717596 - 20746317
28722
ENSAPLT00000004212
20717596 - 20736523
18928