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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20719861_20720412_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20719861 - 20720412
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
GCTTCTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
AKQVEAKDNKITELLNDVER
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
1
74.1
34.5
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044372
20717596 - 20736523
18928
ENSAPLT00000024087
20717596 - 20746317
28722
ENSAPLT00000004212
20717596 - 20736523
18928