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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20725722_20726456_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20725722 - 20726456
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
ISGLQLQLNEEQMFADDLEI
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
35.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.1
0.81
0.8
80.7
36.7
Minor 5ss
43.5
-0.7
2.9
56.9
47.3
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024087
20717596 - 20746317
28722
ENSAPLT00000004212
20717596 - 20736523
18928