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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20730243_20730348_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20730243 - 20730348
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTTTCCTTATTT
Flanking Amino Acid:
HGASVNAKDGDGRTPLVLAT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
74.6
0.85
1.6
87.57
38.6

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004212
20717596 - 20736523
18928
ENSAPLT00000044372
20717596 - 20736523
18928
ENSAPLT00000024087
20717596 - 20746317
28722