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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20730937_20731087_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20730937 - 20731087
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGAAA
5'SS Class:
major
3'SS Sequence:
CTTATTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTATTTTAACA
Flanking Amino Acid:
HALCLQKLLQYNCPTENVDL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
67.9
38.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.6
0.69
0.9
76.8
36
Minor 5ss
30.6
-2.2
3.3
39.7
45.9
Minor BPS
70.6
0.64
1.3
75.15
36.6

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044372
20717596 - 20736523
18928
ENSAPLT00000024087
20717596 - 20746317
28722
ENSAPLT00000004212
20717596 - 20736523
18928