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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20731998_20733563_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20731998 - 20733563
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTGTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTGTGCTTAAAG
Flanking Amino Acid:
PTKLDVEGRSAFHVVASKGN
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
72.3
39.5
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
77.7
0.62
0.9
77.1
37.1
Minor 5ss
37
-1.5
2.7
41.3
38.3
Minor BPS
61.1
0.21
2
68.51
44.8

Associated Gene:

Gene:
UACA
Ensembl Gene ID:
ENSAPLG00000004038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044372
20717596 - 20736523
18928
ENSAPLT00000024087
20717596 - 20746317
28722
ENSAPLT00000004212
20717596 - 20736523
18928