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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20762756_20763288_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20762756 - 20763288
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CCATCATTCATT
Flanking Amino Acid:
LLLNYLHDFLKTPHGSLLSL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
63.8
0.31
1
59.7
40.9
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
48.7
-0
2
65.41
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004933
20762666 - 20780106
17441