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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20763856_20765093_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20763856 - 20765093
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGAAC
U12 Branch Point Sequence:
CTCTGTTTACCA
Flanking Amino Acid:
YKKSRGNTDNKEYAVNEVVA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
53
0.07
1.4
64
39.8
Major PPT
75.9
0.58
0.9
69.3
40.6
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
49
-0
2.1
61.93
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033500
20762125 - 20780106
17982
ENSAPLT00000004933
20762666 - 20780106
17441
ENSAPLT00000046344
20762125 - 20780106
17982
ENSAPLT00000039467
20762125 - 20780106
17982