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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20765183_20766804_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20765183 - 20766804
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
ATTTGCTCAATT
Flanking Amino Acid:
DWDLITRQKQLFYLPAKKNV
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
84.1
0.77
0.8
76.7
37.4
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
62.2
0.46
2
82.67
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004933
20762666 - 20780106
17441
ENSAPLT00000046344
20762125 - 20780106
17982
ENSAPLT00000039467
20762125 - 20780106
17982
ENSAPLT00000033500
20762125 - 20780106
17982