About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20766907_20767207_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20766907 - 20767207
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGTGGCTTCACT
Flanking Amino Acid:
RARVDPTVESEETFMNRVEV
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
70.9
39.3
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
46.7
-0.3
3.2
67
44.2
Minor BPS
51.3
0.12
2.3
76.24
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039467
20762125 - 20780106
17982
ENSAPLT00000033500
20762125 - 20780106
17982
ENSAPLT00000004933
20762666 - 20780106
17441
ENSAPLT00000046344
20762125 - 20780106
17982