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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20767912_20772313_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20767912 - 20772313
Intron Length:
4402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTGCAATAATT
Flanking Amino Acid:
CCLETPTISTRKTKKNKQKT
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
86.3
0.82
0.8
80.9
31.1
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
57.3
0.31
2
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046344
20762125 - 20780106
17982
ENSAPLT00000033500
20762125 - 20780106
17982
ENSAPLT00000004933
20762666 - 20780106
17441