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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20767912_20774945_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20767912 - 20774945
Intron Length:
7034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
GTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTGCAATAATT
Flanking Amino Acid:
TSGLQQKNVEVKTKKNKQKT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
62.8
42
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
86.3
0.82
0.8
80.9
31.1
Minor 5ss
35.8
-1.6
3
44.9
42.8
Minor BPS
57.3
0.31
2
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039467
20762125 - 20780106
17982