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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20772377_20774945_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20772377 - 20774945
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
CCATTGTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
CTTTCCTTAACT
Flanking Amino Acid:
TSGLQQKNVEVFFRRDGAHT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
62.8
42
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
60.7
0.24
1
53.3
41.3
Minor 5ss
35.8
-1.6
3
44.9
42.8
Minor BPS
93.1
1.44
0.8
100
28.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046344
20762125 - 20780106
17982
ENSAPLT00000033500
20762125 - 20780106
17982
ENSAPLT00000004933
20762666 - 20780106
17441