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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20776052_20776466_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20776052 - 20776466
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATCT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTGAACA
Flanking Amino Acid:
HRQKSELFFLHWDEWVPESR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
69.2
36.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
42.8
-0.8
3.1
63.5
41.4
Minor BPS
68.6
0.58
1.3
76.57
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039467
20762125 - 20780106
17982
ENSAPLT00000033500
20762125 - 20780106
17982
ENSAPLT00000004933
20762666 - 20780106
17441