About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20776052_20777952_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20776052 - 20777952
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTGAACA
Flanking Amino Acid:
YFIHYSGWNKNWDEWVPESR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
68.6
0.58
1.3
76.57
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046344
20762125 - 20780106
17982