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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20778021_20779423_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20778021 - 20779423
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGGTACTGACCA
Flanking Amino Acid:
FHGPLLYEAKCVKVAIKDKQ
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
80.4
0.68
0.8
72.1
37.9
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
48.4
-0.1
1.9
62.23
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004728
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039467
20762125 - 20780106
17982
ENSAPLT00000033500
20762125 - 20780106
17982
ENSAPLT00000004933
20762666 - 20780106
17441
ENSAPLT00000046344
20762125 - 20780106
17982