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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20795924_20796993_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20795924 - 20796993
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCCC
5'SS Class:
major
3'SS Sequence:
TGCTCTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
GTGCTCTTACAC
Flanking Amino Acid:
AFTVAHELGHSFGIQHDGSS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
51.8
45.5
Major BPS
69.2
0.48
1
61
37.1
Major PPT
73.3
0.53
0.9
68.4
36.5
Minor 5ss
43.6
-0.7
3.1
60.9
43.6
Minor BPS
48.6
-0.1
1.7
57.43
41

Associated Gene:

Gene:
ADAMTS7
Ensembl Gene ID:
ENSAPLG00000009285
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044815
20792297 - 20826867
34571
ENSAPLT00000009766
20792297 - 20827179
34883