Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20800400_20800562_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20800400 - 20800562

Intron Length:

163

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGCTGT

5'SS Class:

major

3'SS Sequence:

CTGCTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCAAAT

U12 Branch Point Sequence:

CGTGCAGTAACC

Flanking Amino Acid:

AYSTFCDDMDSVCNTLWCTV

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.3

69.7

43.7

Major BPS

62.1

0.3

1.2

67.3

37.8

Major PPT

81.7

0.71

0.8

76.6

Minor 5ss

-0.3

2.9

63.8

41.3

Minor BPS

-0.3

2.3

59.92

Associated Gene:

Gene:

ADAMTS7

Ensembl Gene ID:

ENSAPLG00000009285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009766

20792297 - 20827179

34883

ENSAPLT00000044815

20792297 - 20826867

34571