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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20800656_20801128_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20800656 - 20801128
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TTCTCCTGGACT
Flanking Amino Acid:
VDGTACGENKWCFNGECVPV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.4
0.41
1
59
37.6
Major PPT
89.5
0.89
0.6
84.5
23.1
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
74.5
0.85
1.4
88.21
37

Associated Gene:

Gene:
ADAMTS7
Ensembl Gene ID:
ENSAPLG00000009285
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044815
20792297 - 20826867
34571
ENSAPLT00000009766
20792297 - 20827179
34883