About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20804224_20805898_F


Intron Information:

Intron Rank:
10

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
20804224 - 20805898

Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACGGCCC

5'SS Class:
major

3'SS Sequence:
GGTCTTGTTGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTGAC

U12 Branch Point Sequence:
CGGTGCTGACGG

Flanking Amino Acid:
RDMCINGICKNVGCDYEIDS

Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.9
0.66
1.1
63.1
39.8

Major BPS
66.3
0.4
1.1
57
41.8

Major PPT
75.6
0.58
1
68.8
41.9

Minor 5ss
30.9
-2.2
3.4
42.7
44.4

Minor BPS
36.7
-1.1
2.2
36.1
45.5

Associated Gene:

Gene:
ADAMTS7

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

20792297 - 20827179
34883

20792297 - 20826867
34571