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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20812329_20812468_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20812329 - 20812468
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGCTCT
5'SS Class:
weak_major
3'SS Sequence:
CATCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CACACGTTTACA
Flanking Amino Acid:
RTCNEEPCPARWWVGEWQKC
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.3
65
41.7
Major BPS
72.8
0.57
1
81
30.3
Major PPT
74.4
0.55
0.8
65.8
35.6
Minor 5ss
48
-0.2
2.5
66.2
44.8
Minor BPS
44.2
-0.4
2.3
52.64
45.1

Associated Gene:

Gene:
ADAMTS7
Ensembl Gene ID:
ENSAPLG00000009285
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044815
20792297 - 20826867
34571
ENSAPLT00000009766
20792297 - 20827179
34883