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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20812683_20815373_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20812683 - 20815373
Intron Length:
2691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTGCTCTGAAAT
Flanking Amino Acid:
SQWAVGNWSECSATCGNGTQ
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
52.8
0.17
1.6
68.49
41.6

Associated Gene:

Gene:
ADAMTS7
Ensembl Gene ID:
ENSAPLG00000009285
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044815
20792297 - 20826867
34571
ENSAPLT00000009766
20792297 - 20827179
34883