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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20819329_20819743_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20819329 - 20819743
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATGAC
U12 Branch Point Sequence:
GCCCAGATGACA
Flanking Amino Acid:
TGWVVGSWGQCSAPCGGGIQ
Intron Amino Acid Position:
1418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
50.8
0.02
1.2
43.2
39.2
Major PPT
76.1
0.59
0.8
69.2
31.4
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
37
-1
2.2
42.55
38.5

Associated Gene:

Gene:
ADAMTS7
Ensembl Gene ID:
ENSAPLG00000009285
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009766
20792297 - 20827179
34883