About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20839159_20839461_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20839159 - 20839461
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGATGTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCTGACTT
Flanking Amino Acid:
SEGTHSTEEDINKQINDKER
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.2
0.66
1
73.1
41.9
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
57.7
0.32
1.7
77.06
39.7

Associated Gene:

Gene:
CIAO2A
Ensembl Gene ID:
ENSAPLG00000009207
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009578
20838842 - 20842622
3781