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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20839508_20841209_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20839508 - 20841209
Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTAACATTAATG
Flanking Amino Acid:
LQRCLPFRHKLEIYISEGTH
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.2
0.68
0.8
76.9
31
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
54.2
-0
1.7
58.31
43.2

Associated Gene:

Gene:
CIAO2A
Ensembl Gene ID:
ENSAPLG00000009207
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009578
20838842 - 20842622
3781