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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20847737_20848485_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20847737 - 20848485
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTAAATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATACCTTTAAAT
Flanking Amino Acid:
LKKHLEVKNISLSSILSLRI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.6
0.69
0.9
73.4
40.6
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
67.4
0.63
1.3
78.47
36.9

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781