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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20848714_20849198_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
20848714 - 20849198
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACACCTTTTAAAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
LFFLDSSGWIYIFDCFDGAN
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
63.8
0.31
1.1
63
36.6
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781