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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20849398_20850007_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20849398 - 20850007
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAAAAATTAATT
Flanking Amino Acid:
AISVDLNKYFRQFPGHLICK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84.4
0.77
0.8
81.3
36
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
51.1
0.11
1.8
69.76
40.3

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781