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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20850146_20850277_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20850146 - 20850277
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
TTCTCCATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTATGGATAACT
Flanking Amino Acid:
ELMSSSFRVDRSWKAHLSSL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
78
0.63
0.8
69.9
35.1
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
47.6
-0.1
2.6
77.78
44.2

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781