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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20854118_20854220_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20854118 - 20854220
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCT|GCATGCATA
5'SS Class:
weak_major
3'SS Sequence:
TGTGTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATGTGCATAACA
Flanking Amino Acid:
TRSLNSFFSSAGLENRQLDT
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.5
59.2
45.4
Major BPS
70
0.5
1
67
39.8
Major PPT
65.5
0.35
1
58.2
43.1
Minor 5ss
41.6
-0.9
4
66.5
44.6
Minor BPS
55.5
0.17
2.1
70.75
41.3

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781