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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20854664_20854753_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20854664 - 20854753
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGATAGAA
5'SS Class:
weak_major
3'SS Sequence:
GCTCAGCAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCAGCTTTAAAT
Flanking Amino Acid:
FILIYISYDHLENDMEPQSK
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.1
55
30.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
55.7
0.13
1.1
51.9
41.6
Minor 5ss
26.9
-2.6
3.3
35.1
42.5
Minor BPS
55.7
0.26
1.6
65.31
45.4

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781