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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20854861_20855878_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20854861 - 20855878
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTCGTTTAACT
Flanking Amino Acid:
QLEEIFVHTEEPDEYLQKAA
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
77.8
33.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
73.2
0.52
1
69.1
41.3
Minor 5ss
41.1
-1
3.1
48.1
47.5
Minor BPS
71.3
0.75
1.7
89.23
35.4

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781