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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20856058_20856163_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20856058 - 20856163
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAT
U12 Branch Point Sequence:
TGTTCCAGATTC
Flanking Amino Acid:
SQTWEKLTPEEVIAEAILSN
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
61.5
0.29
1.1
56.9
40.5
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
48.3
-0.1
2
65.35
40

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781