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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2085643_2086258_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2085643 - 2086258
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCGTTGCTAACG
Flanking Amino Acid:
ESHSHIYNWERYHESQFSDH
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
80.2
0.68
0.9
73.7
40.8
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
45.6
-0.4
2.4
54.96
46.4

Associated Gene:

Gene:
MAPK6
Ensembl Gene ID:
ENSAPLG00000005030
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005199
2078891 - 2088501
9611