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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20857034_20857475_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20857034 - 20857475
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGTAGAAA
5'SS Class:
weak_major
3'SS Sequence:
TTAAAGGTGAAAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AATACTTTAATT
Flanking Amino Acid:
VDKHVRDLLVILQEENYFSE
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.23
1
59.7
34
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
48
-0.1
1.3
44.3
45.4
Minor 5ss
33.3
-1.9
3.2
38.1
41.7
Minor BPS
72.4
0.78
1.2
80.41
35.2

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781