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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20858631_20859091_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20858631 - 20859091
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGAAGA
5'SS Class:
major
3'SS Sequence:
TTTTCCAATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTTCCAATA
Flanking Amino Acid:
ARQGKYPGVEKLSTCNPEVL
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
66.6
38.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80
0.67
0.9
74.5
34.1
Minor 5ss
30.9
-2.2
2.7
33.8
34.8
Minor BPS
53.2
0.1
1.8
71.6
34.7

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781