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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20859300_20859834_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20859300 - 20859834
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TCTCTTTTTAAG
Flanking Amino Acid:
MRNDILNKLARNGIFVLSEL
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
77.5
0.62
1
82.1
27
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
46.9
-0.3
1.8
53.05
41.8

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781