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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20862529_20863318_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20862529 - 20863318
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTAATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCTGTCTTAATA
Flanking Amino Acid:
PDISLYHLVQTLVPFDPTKL
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.9
0.69
0.9
77.3
36.6
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
64.8
0.46
1.4
67
40.2

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781