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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20863386_20863862_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20863386 - 20863862
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTTATCAGCT
Flanking Amino Acid:
WQSTNTLALSDTSSDFPHFS
Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.4
0.64
0.9
70.7
40.3
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
49
0
2
74.3
42

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781