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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20864029_20865215_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20864029 - 20865215
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CGCGTATTGACT
Flanking Amino Acid:
QLVKSKSPKQLIQQAGNEAY
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
47.3
-0.1
1.7
59.97
43.8

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781