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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20865422_20865985_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20865422 - 20865985
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTCTTTTAAAC
Flanking Amino Acid:
SQRNEIRESLVEKLTKLAEG
Intron Amino Acid Position:
1216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.7
44.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
42.6
-0.8
2.9
49.5
46.5
Minor BPS
64.3
0.43
1.3
71.15
33.3

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781