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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20866095_20866525_F

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20866095 - 20866525
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTGGATGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATCTTTAAAT
Flanking Amino Acid:
WDEIEHQGIKKTSSDSRRQW
Intron Amino Acid Position:
1252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59.4
0.21
1.1
51.6
46.2
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
79.5
1
1.2
90.31
33

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781