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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20866686_20867912_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20866686 - 20867912
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATGCTCTGTATA
Flanking Amino Acid:
TQLYSYKPDEVISILHGFTP
Intron Amino Acid Position:
1306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
71.4
0.53
1
67
39.8
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
46
-0.3
1.7
55.47
37.7

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781