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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20869029_20870246_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20869029 - 20870246
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTGTATACA
Flanking Amino Acid:
LDKFQEQLTELKTSDEPAAS
Intron Amino Acid Position:
1495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75
0.56
1
69.7
39.8
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
46.5
-0.2
2.5
70.34
42.1

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781