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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20870407_20870823_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20870407 - 20870823
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TCCTTTGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTGCCTTAAAT
Flanking Amino Acid:
LFAATDNLLDGPYVKKLCAL
Intron Amino Acid Position:
1548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.8
0.42
1
65.4
39.1
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
69.3
0.68
1.5
79.57
42.3

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781